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oph:cluster:startupguide

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oph:cluster:startupguide [2023/06/14 07:40] carlo.cintolesi@unibo.itoph:cluster:startupguide [2025/02/10 11:29] (versione attuale) – aggiornato indirizzo IP del frontend mario.petroli@unibo.it
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 Once authorised, one could access the cluster via ssh protocol. The required password is the one of your university e-mail. From the Linux terminal, type the following instruction: Once authorised, one could access the cluster via ssh protocol. The required password is the one of your university e-mail. From the Linux terminal, type the following instruction:
-  * if you are a **student** or a **staff member**: ''ssh name.surname00@137.204.50.177''+  ssh name.surname00@137.204.165.41 
 +(you can use any other ophfeX address instead of 137.204.165.41)
  
-Once logged-in, you will be landed on the [[oph:cluster:jobs|Frontend]], the workspace shared by all users that is employed to submit jobs and access datasets stored in memory.+Once logged in, you will land on the [[oph:cluster:jobs|Frontend]], the workspace shared by all users that is employed to submit jobs and access datasets stored in memory.
  
 <WRAP center round alert 60%> <WRAP center round alert 60%>
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 <WRAP center round alert 60%> <WRAP center round alert 60%>
-The /scratch area cannot handle folders with a large number of files. Data folders in this area must be compacted into archives (e.g., .tgz or .zip) unless in imminent use.+The /scratch area cannot handle folders with a large number of files. Data folders in this area must be compacted into archives (e.g., .tgz or .zip).
 </WRAP> </WRAP>
  
 **Please pay attention to this policy**: the stable number of files saved in /scratch shall not exceed a few thousand per user. Otherwise, the system becomes incredibly slow and unstable. Periodic checks on the number of files of each user are carried out automatically. **Please pay attention to this policy**: the stable number of files saved in /scratch shall not exceed a few thousand per user. Otherwise, the system becomes incredibly slow and unstable. Periodic checks on the number of files of each user are carried out automatically.
  
 +**Note to student supervisors **: Once you have created the data write folder for your students, you can request read and write rights to access the files through ''setfacl -m u:name.surname0:rw /home/pathToFolder'', where ''name.surname0'' is your account name and ''/home/pathToFolder'' is the universal path to the folder you want to access. 
 ===== Run a Job ===== ===== Run a Job =====
  
-The job executed (in parallel or serial) on the cluster are managed by  [[https://slurm.schedmd.com/documentation.html|Slurm WorkLoad Manager]].+The job executed (in parallel or serial) on the cluster is managed by  [[https://slurm.schedmd.com/documentation.html|Slurm WorkLoad Manager]].
 The submission of a job is done via a bash-type script, consisting of: the header with metadata for users, the execution settings (e.g. number of processors, memory, execution time), the modules and the executable to be run. See the section [[oph:cluster:jobs|Run a Job]] for more details. The submission of a job is done via a bash-type script, consisting of: the header with metadata for users, the execution settings (e.g. number of processors, memory, execution time), the modules and the executable to be run. See the section [[oph:cluster:jobs|Run a Job]] for more details.
  
 <WRAP center round tip 60%> <WRAP center round tip 60%>
-An example job script with comments can be downloaded here and adapted to personal needs:  [[https://liveunibo.sharepoint.com/:u:/s/HPCClusterbetatesters/EecW_OOm3_NCle2VM3lZtZgBUSj6IbAxR_Hmh0Faf3quCQ?e=whnblQ|runParallel.sh]]+An example job script with comments can be downloaded here and adapted to personal needs:  [[https://apps.difa.unibo.it/wiki/_export/code/oph:cluster:jobs?codeblock=0|runParallel.sh]]
 </WRAP> </WRAP>
  
oph/cluster/startupguide.1686728420.txt.gz · Ultima modifica: 2023/06/14 07:40 da carlo.cintolesi@unibo.it

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